Community

Are you looking for other NHP neuroimaging researchers to discuss practical issues, brainstorm about new research ideas, build a network, or find collaborators? You can use one of our contact options, explore the colaborative projects open to contributors on our collaborations page or explore a community-driven initiative from the list below. If you think we should add something to this list, let us know.

Global Collaboration Workshops

The PRIME-DRE community aims to meet every two years to discuss progress and future efforts. You can find more info on these meetings here:

Publications

You can read about the PRIME-DE and PRIME-RE inititatives here:

PRIME-DRE Consortium (2021). Toward next-generation primate neuroscience: A collaboration-based strategic plan for integrative neuroimaging. Neuron, in press.
Messinger A., Sirmpilatze N., Heuer K., Loh K-K, Mars R.B., Sein J., Xu T., Glen D., Jung B., Seidlitz J., Taylor P., Toro R., Garza-Villarreal E.A., Sponheim C., Wang X., Benn R.A., Cagna B., Dadarwal R., Evrardt H.C., Garcia-Saldivarp P., Giavasis S., Hartig R., Lepage C., Liu C., Majka P., Merchant H., Milham M.P., Rosa M.G.P., Tasserie J., Uhrig L., Margulies D.S., & Klink P.C. (2021). A collaborative resource platform for non-human primate neuroimaging. NeuroImage.
PRIME-DE Consortium (2020). Accelerating the Evolution of Nonhuman Primate Neuroimaging. Neuron 105(4), 600-603.
Milham M.P, et al. (2018). An Open Resource for Non-human Primate Imaging. Neuron 100(1), 61-74.e2.
Vanduffel, W. (2018). The Blind Men and the Elephant: The Quest for Open Data Repositories. Neuron 100(1), 1-3.

Many PRIME-DRE affiliates have contributed to a special issue of NeuroImage dedicated to NHP neuroimaging.

Perspectives

Song, X., García-Saldivar, P., Kindred, N., Wang, Y., Merchant, H., Meguerditchian, A., Yang, Y., Stein, E.A., Bradberry, C.W., Hamed, S.B., Jedema, H.P., & Poirier, C. (2021). Strengths and challenges of longitudinal primate neuroimaging. Neuroimage.
Friedrich, P., Forkel, S.J., Amiez, C., Balsters, J.H., Coulon, O., Fan, L., Goulas, A., Hadj-Bouziane, F., Hecht, E.E., Heuer, K., Jiang, T., Latzman, R.D., Liu, X., Loh, K.K., Patil, K.R., Lopez-Persem, A., Procyk, E., Sallet, J., Toro, R., … Thiebaut de Schotten, M. (2021). Imaging evolution of the primate brain: the next frontier?. Neuroimage.
Mitchell, A.S., Hartig, R., Basso, M.A., Jarrett, W., Kastner, S., & Poirier, C. (2021). International primate neuroscience research regulation, public engagement and transparency opportunities. Neuroimage.
Autio, J.A., Zhu, Q., Li, X., Glasser, M.F., Schwiedrzik, C.M., Fair, D.A., Zimmermann, J., Yacoub, E., Menon, R.S., Van Essen, D.C., Hayashi, T., Russ, B., & Vanduffel, W. (2021). Minimal Specifications for Non-Human Primate MRI: Challenges in Standardizing and Harmonizing Data Collection. Neuroimage.

Standardization, pipelines, analytics

Garcia-Saldivar, P., Garimella, A., Garza-Villarreal, E.A., Mendez, F. A., Concha, L., & Merchant, H. (2021). PREEMACS: Pipeline for Preprocessing and Extraction of the Macaque Brain Surface. Neuroimage.
Fox, A.S., Holley, D., Klink, P.C., Arbuckle, S.A., Barnes, C.A., Diedrichsen, J., Kwok, S.C., Kyle, C., Pruszynski, J.A., Seidlitz, J., Zhou, X., Poldrack, R.A., & Gorgolewski, K.J. (2021). Sharing Voxelwise Neuroimaging Results from Rhesus Monkeys and Other Species with Neurovault. Neuroimage.
Jung, B., Taylor, P.A., Seidlitz, J., Sponheim, C., Perkins, P., Ungerleider, L.G., Glen, D., & Messinger, A. (2021). A comprehensive macaque fMRI pipeline and hierarchical analysis. Neuroimage.
Wang, X., Li, X.-H., Cho, J.W., Russ, B.E., Rajamani, N., Omelchenko, A., Ai, L., Korchmaros, A., Sawiak, S., Benn, R.A., Garcia-Saldivar, P., Wang, Z., Kalin, N.H., Schroeder, C.E., Craddock, R.C., Fox, A.S., Evans, A.C., Messinger, A., Milham, M.P., & Xu, T. (2021). U-Net Model for Brain Extraction in Non-human Primates. Neuroimage.
Russ, B., Petkov, C., Kwok, S., Zhu, Q., Belin, P., Vanduffel, W., Ben Hamed, S. (2021). Common functional localizers to enhance NHP & cross-species neuroscience imaging research. pending revision

International Regulation, 3Rs, Metadata

Basso, M.A., Frey, S., Guerriero, K.A., Jarraya, B., Kastner, S., Koyano, K.W., Leopold, D.A., Murphy, K., Poirier, C., Pope, W., Silva, A.C., Tansey, G., & Uhrig, L. (2021). Using non-invasive neuroimaging to enhance the care, well-being and experimental outcomes of laboratory non-human primates. Neuroimage.
Prescott, M.J., & Poirier, C. (2021). The role of MRI in applying the 3Rs to non-human primate neuroscience. Neuroimage
Poirier, C., Hamed, S.B., Garcia-Saldivar, P., Kwok, S.C., Meguerditchian, A., Merchant, H., Rogers, J., Wells, S., & Fox, A.S. (2021). Beyond MRI: on the scientific value of combining non-human primate neuroimaging with metadata. Neuroimage
Balezeau, F., Nacef, J., Kikuchi, Y., Schneider, F., Rocchi, F., Muers, R.S., Fernandez-Palacios O’Connor, R., Blau, C., Wilson, B., Saunders, R. C., Howard, M., 3rd, Thiele, A., Griffiths, T.D., Petkov, C.I., & Murphy, K.(2021). MRI monitoring of macaque monkeys in neuroscience: case studies, resource and normative data comparisons. Neuroimage

Generation of Community-led Resources

Messinger, A., Sirmpilatze, N., Heuer, K., Loh, K.K., Mars, R.B., Sein, J., Xu, T., Glen, D., Jung, B., Seidlitz, J., Taylor, P., Toro, R., Garza-Villarreal, E.A., Sponheim, C., Wang, X., Benn, R.A., Cagna, B., Dadarwal, R., Evrard, H.C., … Klink, P.C. (2021). A collaborative resource platform for non-human primate neuroimaging. Neuroimage
Liu, C., Yen, C.C.-C., Szczupak, D., Tian, X., Glen, D., & Silva, A.C. (2021). Marmoset Brain Mapping V3: Population multi-modal standard volumetric and surface-based templates. Neuroimage
Hayashi, T., Hou, Y., Glasser, M.F., Autio, J.A., Knoblauch, K., Inoue-Murayama, M., Coalson, T., Yacoub, E., Smith, S., Kennedy, H., & Van Essen, D.C. (2021). The NonHuman Primate Neuroimaging & Neuroanatomy Project. Neuroimage
Rapan, L., Froudist-Walsh, S., Niu, M., Xu, T., Funck, T., Zilles, K., & Palomero-Gallagher, N. (2021). Multimodal 3D atlas of the macaque monkey motor and premotor cortex. Neuroimage
Majka, P., Bednarek, S., Chan, J.M., Jermakow, N., Liu, C., Saworska, G., Worthy, K.H., Silva, A.C., Wójcik, D.K., & Rosa, M.G. (2021). Histology-based average template of the marmoset cortex with probabilistic localization of the cytoarchitectural areas. Neuroimage
Sakai, T., Hata, J., Shintaku, Y., Ohta, H., Sogabe, K., Mori, S., Okano, H.J., Hamada, Y., Hirabayashi, T., Minamimoto, T., Sadato, N., Okano, H., & Oishi, K. (2021). The Japan Monkey Centre Primates Brain Imaging Repository of high-resolution postmortem magnetic resonance imaging: the second phase of the archive of digital records. biorXiv
Hartig, R., Glen, D., Jung, B., Logothetis, N.K., Paxinos, G., Garza-Villarreal, E.A., Messinger, A., & Evrard, H.C. (2021). Subcortical Atlas of the Rhesus Macaque (SARM) for Magnetic Resonance Imaging. Neuroimage
Weiss, A.R., Liu, Z., Wang, X., Liguore, W.A., Kroenke, C.D., & McBride, J.L. (2021). The macaque brain ONPRC18 template with combined gray and white matter labelmap for multimodal neuroimaging studies of nonhuman primates. Neuroimage
Niu, M., Rapan, L., Funck, T., Froudist-Walsh, S., Zhao, L., Zilles, K., & Palomero-Gallagher, N. (2021). Organization of the macaque monkey inferior parietal lobule based on multimodal receptor architectonics. Neuroimage

Brain pertubation - systems & circuits

Klink, P.C., Aubry, J.-F., Ferrera, V., Fox, A.S., Froudist-Walsh, S., Jarraya, B., Konofagou, E.E., Krauzlis, R., Messinger, A., Mitchell, A.S., Ortiz-Rios, M., Oya, H., Roberts, A.C., Roe, A.W., Rushworth, M.F.S., Sallet, J., Schmid, M.C., Schroeder, C.E., Tasserie, J., … Petkov, C. (2021). Combining Brain Perturbation and Neuroimaging in non-human Primates. Neuroimage
Shi, S., Xu, A.G., Rui, Y.-Y., Zhang, X., Romanski, L.M., Gothard, K.M., & Roe, A.W. (2021). Infrared neural stimulation with 7T fMRI: a rapid in vivo method for mapping cortical connections of primate amygdala. Neuroimage
Signorelli, C.M., Uhrig, L., Kringelbach, M., Jarraya, B., & Deco, G. (2021). Hierarchical disruption in the cortex of anesthetized monkeys as a new signature of consciousness loss. Neuroimage

Ultra-high field imaging

Yacoub, E., Grier, M.D., Auerbach, E.J., Lagore, R.L., Harel, N., Adriany, G., Zilverstand, A., Hayden, B.Y., Heilbronner, S.R., Uğurbil, K., & Zimmermann, J. (2021). Ultra-high field (10.5 T) resting state fMRI in the macaque. Neuroimage
Han, M.J., Park C.U., Kang, S., Kim, B., Nikolaidis, A., Milham, M.P., Hong, S.J., Kim, S.G., Baeg, E. (2021). Mapping functional gradients of the striatal circuit using simultaneous microelectric stimulation and ultrahigh-field fMRI in non-human primates. Neuroimage

Discovery papers

Ortiz-Rios, M., Balezeau, F., Haag, M., Kaiser, M., Schmid, M.C. (2021). Dynamic reconfiguration of macaque brain networks during free-viewing of natural scenes. biorXiv
Liu, X., Eickhoff, S.B., Caspers, S., Wu, J., Genon, S., Hoffstaedter, F., Mars, R.B., Sommer, I.E., Eickhoff, C.R., Chen, J., Jardri, R., Reetz, K., Dogan, I., Aleman, A., Kogler, L., Gruber, O., Caspers, J., Mathys, C., & Patil, K.R. (2021). Functional parcellation of human and macaque striatum reveals human-specific connectivity in the dorsal caudate. Neuroimage
Kagan, I., Gibson, L., Spanou, E., & Wilke, M. (2021). Effective connectivity and spatial selectivity-dependent fMRI changes elicited by microstimulation of pulvinar and LIP. biorXiv
Becker, Y., Sein, J., Velly, L., Giacomino, L., Renaud, L., Lacoste, R., Anton, J.-L., Nazarian, B., Berne, C., & Meguerditchian, A. (2021). Early Left-Planum Temporale Asymmetry in Newborn Monkeys: A Longitudinal Structural MRI Study Across Two Age Classes Neuroimage

Relevant articles in other journals

Tools

Ji, Jie Lisa, Jure Demšar, Clara Fonteneau, Zailyn Tamayo, Lining Pan, Aleksij Kraljič, Andraž Matkovič, et al. (2023). QuNex—An Integrative Platform for Reproducible Neuroimaging Analytics. Frontiers in Neuroinformatics
Warrington, Shaun, Katherine L. Bryant, Alexandr A. Khrapitchev, Jerome Sallet, Marina Charquero-Ballester, Gwenaëlle Douaud, Saad Jbabdi, Rogier B. Mars, and Stamatios N. Sotiropoulos. (2020). XTRACT - Standardised Protocols for Automated Tractography in the Human and Macaque Brain. NeuroImage

Perspective/Review

DeCasien, Alex R., Robert A. Barton, and James P. Higham. (2022). Understanding the Human Brain: Insights from Comparative Biology. Trends in Cognitive Sciences.
Yokoyama, Chihiro, Joonas A. Autio, Takuro Ikeda, Jérôme Sallet, Rogier B. Mars, David C. Van Essen, Matthew F. Glasser, Norihiro Sadato, and Takuya Hayashi. (2021). Comparative Connectomics of the Primate Social Brain. NeuroImage

Discovery

Amiez, Céline, Jérôme Sallet, William D. Hopkins, Adrien Meguerditchian, Fadila Hadj-Bouziane, Suliann Ben Hamed, Charles R. E. Wilson, Emmanuel Procyk, and Michael Petrides. (2019). Sulcal Organization in the Medial Frontal Cortex Provides Insights into Primate Brain Evolution. Nature Communications
Demirci, Nagehan, Mia E. Hoffman, and Maria A. Holland. (2023). Systematic Cortical Thickness and Curvature Patterns in Primates. NeuroImage
Eichert, Nicole, Emma C Robinson, Katherine L Bryant, Saad Jbabdi, Mark Jenkinson, Longchuan Li, Kristine Krug, Kate E Watkins, and Rogier B Mars. Cross-Species Cortical Alignment Identifies Different Types of Anatomical Reorganization in the Primate Temporal Lobe. eLife
Froudist-Walsh, Sean, Ting Xu, Meiqi Niu, Lucija Rapan, Ling Zhao, Daniel S. Margulies, Karl Zilles, Xiao-Jing Wang, and Nicola Palomero-Gallagher. (2023). Gradients of Neurotransmitter Receptor Expression in the Macaque Cortex. Nature Neuroscience
Gordon, Evan M., Roselyne J. Chauvin, Andrew N. Van, Aishwarya Rajesh, Ashley Nielsen, Dillan J. Newbold, Charles J. Lynch, et al. (2023). A Somato-Cognitive Action Network Alternates with Effector Regions in Motor Cortex. Nature
Griffa, Alessandra, Mathieu Mach, Julien Dedelley, Daniel Gutierrez-Barragan, Alessandro Gozzi, Gilles Allali, Joanes Grandjean, Dimitri Van De Ville, and Enrico Amico. (2023). Evidence for Increased Parallel Information Transmission in Human Brain Networks Compared to Macaques and Male Mice. Nature Communications
Liu, Xiaojin, Simon B. Eickhoff, Svenja Caspers, Jianxiao Wu, Sarah Genon, Felix Hoffstaedter, Rogier B. Mars, et al. (2021). Functional Parcellation of Human and Macaque Striatum Reveals Human-Specific Connectivity in the Dorsal Caudate. NeuroImage
Luppi, Andrea I., Pedro A. M. Mediano, Fernando E. Rosas, Negin Holland, Tim D. Fryer, John T. O’Brien, James B. Rowe, David K. Menon, Daniel Bor, and Emmanuel A. Stamatakis. (2022). A Synergistic Core for Human Brain Evolution and Cognition. Nature Neuroscience
Roumazeilles, Lea, Nicole Eichert, Katherine L. Bryant, Davide Folloni, Jerome Sallet, Suhas Vijayakumar, Sean Foxley, et al.(2020). Longitudinal Connections and the Organization of the Temporal Cortex in Macaques, Great Apes, and Humans. PLOS Biology
Trambaiolli, Lucas R, Xiaolong Peng, Julia F Lehman, Gary Linn, Brian E Russ, Charles E Schroeder, Hesheng Liu, and Suzanne N Haber. (2022). Anatomical and Functional Connectivity Support the Existence of a Salience Network Node within the Caudal Ventrolateral Prefrontal Cortex. eLife
Valk, Sofie L., Ting Xu, Daniel S. Margulies, Shahrzad Kharabian Masouleh, Casey Paquola, Alexandros Goulas, Peter Kochunov, et al. (2020). Shaping Brain Structure: Genetic and Phylogenetic Axes of Macroscale Organization of Cortical Thickness. Science Advances
Valk, Sofie L., Ting Xu, Casey Paquola, Bo-yong Park, Richard A. I. Bethlehem, Reinder Vos de Wael, Jessica Royer, et al. (2022). Genetic and Phylogenetic Uncoupling of Structure and Function in Human Transmodal Cortex. Nature Communications
Vickery, S., Hopkins, W.D., Sherwood, C.C., Schapiro, S.J., Latzman, R.D., Caspers, S., Gaser, C., Eickhoff, S.B., Dahnke, R., & Hoffstaedter, F. (2020). Chimpanzee brain morphometry utilizing standardized MRI preprocessing and macroanatomical annotations. eLife
Wan, Bin, Şeyma Bayrak, Ting Xu, H Lina Schaare, Richard AI Bethlehem, Boris C Bernhardt, and Sofie L Valk. (2022). Heritability and Cross-Species Comparisons of Human Cortical Functional Organization Asymmetry. eLife
Xu, Ting, Karl-Heinz Nenning, Ernst Schwartz, Seok-Jun Hong, Joshua T. Vogelstein, Alexandros Goulas, Damien A. Fair, et al. (2020). Cross-Species Functional Alignment Reveals Evolutionary Hierarchy within the Connectome. NeuroImage
Xu, Ting, Darrick Sturgeon, Julian S. B. Ramirez, Seán Froudist-Walsh, Daniel S. Margulies, Charles E. Schroeder, Damien A. Fair, and Michael P. Milham. (2019). Interindividual Variability of Functional Connectivity in Awake and Anesthetized Rhesus Macaque Monkeys. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging

We would be happy to list other useful publications for the NHP neuroimaging community (but have no ambition to recreate Pubmed or Google Scholar). Feel free to get in touch with us if there is a publication that could be added here.